1. Fluorescence Imaging Scale Bar Generation
Cell BiologistBackground
A researcher captured GFP-labeled cell images using a 40x objective and a camera with 3.45 µm pixels, but the acquisition software did not embed a scale bar.
Problem
Needs to calculate the exact microns per pixel and generate a white 20 µm scale bar for a publication figure.
How to use
Enter 2048x1536 for image dimensions, 3.45 for camera pixel size, 40 for objective magnification, 1 for relay magnification, 1 for binning, 509 for emission wavelength, 1.3 for NA, and set the scale bar length to 20 µm.
imageWidthPx: 2048, imageHeightPx: 1536, cameraPixelSizeUm: 3.45, objectiveMagnification: 40, relayMagnification: 1, binning: 1, wavelengthNm: 509, numericalAperture: 1.3, barLengthUm: 20, barColor: '#ffffff', barPosition: 'bottom-right', barThicknessPx: 8, showLabel: trueOutcome
Calculates a pixel size of 0.086 µm/pixel, confirms Nyquist sampling is satisfied, and generates a transparent SVG scale bar of 20 µm.